[gmx-users] error during energy minimization
shailza singh
shailza_iitd at yahoo.com
Mon Feb 21 17:16:33 CET 2005
hi all,
i am novice to GROMACS and trying to perform energy
minimization for my protein.But during mdrun i
encountered the following error:Back Off! I just
backed up step177.pdb to ./#step177.pdb.1#
Wrote pdb files with previous and current coordinates
Step 179 Warning: pressure scaling more than 1%, mu:
inf inf inf
Warning: Only triclinic boxes with the first vector
parallel to the x-axis and the second vector in the
xy-plane are supported.
Box (3x3):
Box[ 0]={ inf, nan,
nan}
Box[ 1]={ nan, inf,
nan}
Box[ 2]={ nan, nan,
inf}
Can not fix pbc.
Fatal error: ci = -1 should be in 0 .. -1 [FILE
nsgrid.c, LINE 218]
Please help
Thanking you in advance
shailja
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