[gmx-users] PBC question

Osmany Guirola Cruz osmany.guirola at cigb.edu.cu
Tue Jan 4 09:39:36 CET 2005

Hi people
 I am doing a protein-ligand in water simulation in a dodecahedron box 
(to reduce number of water molecules and :-)). but in my .gro and .trr 
file  the ligand  is  far  from the protein (PBC) but i want to see
my trr and gro files without the effect of PBC(see interactions etc) i 
probed trjconv with -pbc nojump , with inbox, with whole ... but i don't 
have any result... What can i do?


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