[gmx-users] output file of mk_angndx

[David van der Spoel]

On Thu, 2005-01-27 at 01:12 -0800, Yan Li wrote:
> hi,
> 
> mk_angndx generates an index file with the following
> command,
> mk_angndx -s *.tpr -n *.ndx -type dihedral
> I don't understand the meaning of [phi...] in the
> index file. What I want is a file with all dihedral
> angles in protein, including main chain and side chain
> not just phi and psi. Can anyone give me suggestions
> or show me a way to do it?
You can input that index file to make_ndx and combine the groups there.
> 
> Thanks,
> 
> Stever
> 
> 
> 		
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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