[gmx-users] Re: make_ndx

VISWANADHA SRIDHARA vsrid001 at odu.edu
Fri Jul 1 15:33:36 CEST 2005

Hi GMX users,

I was wondering whether there is any option in make_ndx to get the index of
the atoms(or molecules) as a function of the box vectors.
In other words, can I get the index of the molecules separately which are
1nm spherical radius in a 3nm cube as an example.(say cube's center is the
sphere's center too).

Thanks in advance,

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