[gmx-users] pdb2gmx

[Robert Murawski]

Hello Javier,

genbox has a flag -nmol
which according to the manual

3) Insert a number (-nmol) of extra molecules (-ci) at random positions.
"-nmol 	 int 	 0 	 no of extra molecules to insert"

see in your distro

/usr/local/share/gromacs/html/online/genbox.html

please let me know if this is works or is
what you are looking for

rob.

On Fri, 15 Jul 2005, javier wrote:

> Dear all,
>
>
> I'll be very grateful if somebody can please let me know how could I
> generate initial Gromacs coordinates file (for 25 molecules A) from a PDB
> file(only 1 molecule A). I know from the manual that with  pdb2gmx you are
> able to generate  topology and conf files but do you need  a Pdb file with
> the coordinates of 25  molecules to do this?
>
> Thank you.
>
> Regards,
>
>
> JAvier
>
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-- 
Robert K. Murawski

Institute for Quantum Studies and Department of Physics
Texas A&M University
College Station, TX 77843
979.862.1328