[gmx-users] Decane layer

[M.Naser]

Hi All,

I have trying to make a dacane layer and having some problems. I tried
with genconf and then convert it to pdb file. When run pdb2gmx all the
duplicate atoms are deleted, so it was not helpful. I also tryied with
x2top. I managed to edit xxx.n2t file but unfortunatly, grompp is
complaining saying it could not recognize C1 atom.

Can any one please advise me any better way to make a dacane layer?

With best regards,

Abu


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