[gmx-users] How to check on the progress of parallel run

David spoel at xray.bmc.uu.se
Mon Jul 25 17:49:51 CEST 2005

On Mon, 2005-07-25 at 16:36 +0300, itai bloch wrote:
> Dear gmx users,
> I have just made a first test gromacs MD run on an AMD linux cluster.
> So I have few simple questions:
> 1. The setup is for parallel run on 6 nodes. However, I see only 2
> processes lines. Is there a way to check up on the progress of the run
> at every node (elapsed time etc.)?
What do you mean with "processes lines"?
> 2. Is there a smarter way to follow on the progress of mdrun_mpi?
You can check how much output is written to the output files (ener.edr,
> Thanks in advance,
> Itai.
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David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel

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