[gmx-users] angle force constant in mdp file?
Anton Feenstra
feenstra at few.vu.nl
Tue Jun 14 09:36:15 CEST 2005
David wrote:
> On Mon, 2005-06-13 at 12:08 -0700, David Mobley wrote:
>
>>Dear Gromacs users and team,
>>
>>Concerning restraints, does anyone know why there isn't an option in
>>the mdp files currently for changing angle restraint force constants?
>>For example, dihre-fc and disre_fc are valid options and change the
>>multiplier of the force constant specified in the topology file, but
>>there doesn't seem to be a corresponding parameter for the angle force
>>constant.
>>
>>Does such a parameter exist? If not, does anyone know why not and if
>>this would be expected in the future?
>
>
> It does not. Don't know why. Science isn't always rational.
> Anyway you can probably emulate it's functionality by using in your
> topology
>
> #define MULTFACTOR 1000.0
> #define MYFC(x) (MULTFACCTOR*x)
>
> And then using rather than your normal force constants
>
> [ my_function ]
> 1 2 3 4 1 MYFC(3)
> 2 3 4 5 1 MYFC(4)
in addition, you can set MULTFACTOR from the mdp file, with
defines = -DMULTFACTOR=1000.0
--
Groetjes,
Anton
* NOTE: New Phone & Fax numbers (below) *
_____________ _______________________________________________________
| | |
| _ _ ___,| K. Anton Feenstra |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
|( | )| | | De Boelelaan 1083 - 1081 HV Amsterdam - Netherlands |
| \_/ \_/ | | | Tel: +31 20 59 87608 - Fax: +31 20 59 87610 |
| | Feenstra at few.vu.nl - www.few.vu.nl/~feenstra/ |
| | "If You See Me Getting High, Knock Me Down" (RHCP) |
|_____________|_______________________________________________________|
More information about the gromacs.org_gmx-users
mailing list