[gmx-users] mpiBLAST1.3.0 installation problem

[王艳宣]

Dear All,
   
Did anyone had successfuly installed mpiblast 1.3 on x86_64(RedHat AS 3.0)?

I've some problem to install it
I've compiled NCBI toolkit without error messages
 
 
mpiBlast 1.3
NCBI Toolkit 200410 installed successfully
gcc version 3.2.3 20030502 (Red Hat Linux 3.2.3-42)
 
$./configure --prefix=$mpiBLASThome --with-ncbi=$ncbiHome
...... 
$make
Making all in src
make[1]: Entering directory `/home/bioinfo/mpiblast-1.3.0/src'
make  all-am
make[2]: Entering directory `/home/bioinfo/mpiblast-1.3.0/src'
if mpicc -DHAVE_CONFIG_H -I. -I. -I. -I../include/ -I/home/bioinfo/ncbi/include/  -DUSING_MPI  -DINSTALL_PREFIX="\"/home/bioinfo/mpiBlast\""  -g -O2 -MT mpiblast-blast_hooks.o -MD -MP -MF ".deps/mpiblast-blast_hooks.Tpo" -c -o mpiblast-blast_hooks.o `test -f 'blast_hooks.c' || echo './'`blast_hooks.c; \
then mv -f ".deps/mpiblast-blast_hooks.Tpo" ".deps/mpiblast-blast_hooks.Po"; else rm -f ".deps/mpiblast-blast_hooks.Tpo"; exit 1; fi
blast_hooks.c: In function `initBLAST':
blast_hooks.c:695: structure has no member named `query_adjustments'
blast_hooks.c:696: structure has no member named `effective_db_lengths'
blast_hooks.c: In function `getQuery':
blast_hooks.c:747: structure has no member named `current_queryI'
blast_hooks.c: In function `runBLAST':
blast_hooks.c:1455: structure has no member named `calculate_statistics_and_exit'
blast_hooks.c:1457: structure has no member named `calculate_statistics_and_exit'
blast_hooks.c:1478: structure has no member named `current_queryI'
blast_hooks.c: In function `outputResults':
blast_hooks.c:1573: structure has no member named `calculate_statistics_and_exit'
make[2]: *** [mpiblast-blast_hooks.o] Error 1
make[2]: Leaving directory `/home/bioinfo/mpiblast-1.3.0/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/home/bioinfo/mpiblast-1.3.0/src'
make: *** [all-recursive] Error 1


Best Regards!

yxwang at scut.edu.cn
2005.6.14