[gmx-users] how to set tolerance for bond formation distance?

Kai Zhuang kai.zhuang at gmail.com
Wed Jun 22 17:28:30 CEST 2005

hi all,

how do you adjust the distance between atoms at which gromacs consider
a bond has been formed?

i searched  the manual and can't seem to find the answer.

specifically, i only want to do this for 4 residues, if that's possible

more specifically, i want to prevent 2 bonds from forming.

any ways i can do any of the above?

thanks in advance =-)
Kai Zhuang
BioMedical Engineering @ University of Toronto
kai dot zhuang at gmail dot com
kai.zhuang at gmail.com

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