[gmx-users] problem with g_cluster

[Anton Feenstra]

sridhar at cdfd.org.in wrote:

> Hi GMX users,
> 
> I have a problem with g_cluster. I am using g_cluster to cluster my
> trajectory of 20000 structures
> (20000ps). I am using the matrix file as input using option -dm. The
> program gave error indicating memory fault initially. Later I ran the same
> program using -skip 1000 option, thereby effectively reading only 20
> structures, to check if it runs. Surprisingly the same problem repeats
> even with this option. I am running on a intel(XEON dual
> processor) machine with 2GB RAM and I think
> it is sufficient for the process. I cannot figure out the problem.
> Waiting for your suggessions.
> I am attaching the output messages of the program below

Can you please read my answer before sending your question again?

-- 
Groetjes,

Anton

* NOTE: New Phone & Fax numbers (below) *

  _____________ _______________________________________________________
|             |                                                       |
|  _   _  ___,| K. Anton Feenstra                                     |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
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| \_/ \_/ | | | Tel: +31 20 59 87608 - Fax: +31 20 59 87610           |
|             | Feenstra at few.vu.nl - www.few.vu.nl/~feenstra/         |
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