[gmx-users] viscosity Calculation

[David van der Spoel]

On Tue, 2005-11-08 at 15:02 -0500, Tandia, Adama wrote:
> Dear All, 
> For the first time, I'm trying to use GROMACS to calculate SiO2
> viscosity. 
> I used the option -vis in g_energy_d but I still do not understand how
> to interpret the output. 
> Can anyone help me get started with a .mdp file that uses the
> acceleration and/or lecture me on the output when the option -vis is
> used?

read
@Article{Hess2002b,
  author =       {B. Hess},
  title =        {Determining the shear viscosity of model liquids from
molecular simulation},
  journal =      {J. Chem. Phys.},
  year =         2002,
  volume =       116,
  pages =        {209-217}
}

> 
> Thanks a lot for your generosity.
> 
> Regards,
> 
> Adama
> 
> Adama Tandia 
> Modeling & Simulation 
> Corning INC 
> SP TD 01-01 
> Corning NY 14831 USA 
> Tel:  607 248 1036 
> Fax: 607 974 3405 
> www.corning.com
> 
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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