[gmx-users] How to correct incomplete pdb file

Tsjerk Wassenaar tsjerkw at gmail.com
Wed Nov 16 22:00:44 CET 2005

Hi Hiromichi,

You have to add missing side chains using a modeler. When you load the
protein in SwissPDB Viewer, this will automatically be done. Be sure to also
check the protein for missing residues. This should be indicated in the PDB
file. The option -ignh is of no use at all in this case.



Tsjerk A. Wassenaar, M.Sc.
Groningen Biomolecular Sciences and Biotechnology Institute (GBB)
Dept. of Biophysical Chemistry
University of Groningen
Nijenborgh 4
9747AG Groningen, The Netherlands
+31 50 363 4336
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