[gmx-users] Problems with AFM pulling

Mark Abraham Mark.Abraham at anu.edu.au
Tue Apr 18 10:27:58 CEST 2006

lvcp wrote:
>    Hello,everyone
>      I am trying to simulate the pulling process of a protein by Gromacs 
> 3.2.0. However, when executing the command "mdrun -v -s pull.mdp -o 
> pull_1.tpr -c afterpull -pi pull.ppa -pn pull.ndx", the program only 
> back off the pullout.ppa and pull.pdo with no computing done.
>     I don't know what's the reason.

Giving us the text of the actual error message will probably be the only
way we can tell.


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