[gmx-users] atoms in .top and .gro dont match

[arunima singh]

I am simulating lysozyme 1AKI.pdb in water box gor normal mode analysis. The energy minimization and position restrained MD are running correctly but when doing grompp for normal mode it shows the error "stoms in .top anf .gro dont match(Cl-HW2)"
I dont understand what is going wrong. please help.
Arunima Singh
Bioinformatics Centre,
university of Pune

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