[gmx-users] Huge fluctuations for pressure coupling
Bob Johnson
robertjo at physics.upenn.edu
Wed Apr 19 17:36:29 CEST 2006
Hello everyone,
I have a 20 base single stranded DNA with counterions that is hydrated with
about 9000 water molecules. My pressure coupling input looks like this:
pcoupl = Parrinello-Rahman
pcoupltype = isotropic
ref_p = 1.01
compressibility = 4.5e-5
tau_p = 1.0
However, I get huge pressure fluctuations (RMS fluctuation of 1.71704e+02) and
it seems that the coupling doesn't even enforce the correct pressure (average
pressure of 1.68282e-01). I didn't see anyone in the mailing list that had a
similar problem. Does anyone know what's going on?
Thanks,
Bob
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