[gmx-users] OPLS modification between 3.3 and 3.3.1??
chris.neale at utoronto.ca
chris.neale at utoronto.ca
Wed Apr 19 21:41:52 CEST 2006
Hello,
ffoplsaa.rtp has changed in the 3.3.1 release. However, there are no references
given and no special notification of this fact. I was wondering if anybody knows
the references for this change.
Here is the difference between the two distributions:
diff ~/TEST/gromacs-3.3/share/top/ffoplsaa.rtp
~/TEST/gromacs-3.3.1/share/top/ffoplsaa.rtp
1008,1010c1008,1010
< CD CE NZ HZ1 dih_LYSH_chi5_C_C_N_H
< CD CE NZ HZ2 dih_LYSH_chi5_C_C_N_H
< CD CE NZ HZ3 dih_LYSH_chi5_C_C_N_H
---
> CD CE NZ HZ1 dih_LYS_chi5_C_C_N_H
> CD CE NZ HZ2 dih_LYS_chi5_C_C_N_H
> CD CE NZ HZ3 dih_LYS_chi5_C_C_N_H
1025c1025
< CG opls_210 0.0975 3
---
> CG opls_210 0.048 3
1028,1029c1028,1029
< SD opls_202 -0.435 4
< CE opls_209 0.0375 5
---
> SD opls_202 -0.335 4
> CE opls_209 -0.013 5
1325,1326c1325,1326
< N CA CB CG dih_GLU_chi1_N_C_C_C
< CG CB CA C dih_GLU_chi1_C_C_C_CO
---
> N CA CB CG dih_TRP_chi1_N_C_C_C
> CG CB CA C dih_TRP_chi1_C_C_C_CO
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