[gmx-users] Gromacs-3.3.1 installation

Akshay Patny akshay17 at olemiss.edu
Wed Apr 26 09:27:45 CEST 2006



I am trying to install Gromacs-3.3.1 The machine is SGI Altix and the output
of the uname -a for machine is:


Linux redwood 2.6.5-7.244-sn2 #1 SMP Mon Dec 12 18:32:25 UTC 2005 ia64 ia64
ia64 GNU/Linux


I do not have root privileges and I am trying to install it in the local
directory I have permissions for which is:


I unpacked gromacs-3.3.1.tar in the /work1/r0914


It made a directory /work1/r0914/gromacs-3.3.1/


I first installed fftw-3.1.1 (both single precision and double precision
using) in a separate directory which is:




Then, I cd to /work1/r0914/gromacs-3.3.1/


# setenv CPPFLAGS -I/ ums/ro914/fftw-3.1.1/include

# setenv LDFLAGS -L/ ums/ro914/fftw-3.1.1/lib


# ./configure -prefix=/work1/r0914/gromacs-3.3.1/


# make


# make install


I got the error in the make install which is:



/usr/bin/install: `./g_sham.1' and
`/work1/r0914/gromacs-3.3.1/man/man1/g_sham.1' are the same file

 /usr/bin/install -c -m 644 './make_edi.1'

/usr/bin/install: `./make_edi.1' and
`/work1/r0914/gromacs-3.3.1/man/man1/make_edi.1' are the same file

make[3]: *** [install-man1] Error 1

make[3]: Leaving directory `/work1/r0914/gromacs-3.3.1/man/man1'

make[2]: *** [install-am] Error 2

make[2]: Leaving directory `/work1/r0914/gromacs-3.3.1/man/man1'

make[1]: *** [install-recursive] Error 1

make[1]: Leaving directory `/work1/r0914/gromacs-3.3.1/man'

make: *** [install-recursive] Error 1



Let me know if you need other details





Akshay Patny

Graduate Research Assistant
Faser Hall 417, Department of Medicinal Chemistry

Research Institute of Pharmaceutical Sciences
University of Mississippi
University, MS 38677
E-mail: akshay17 at olemiss.edu
Tel: 662-915-1286 (office); Web: www.olemiss.edu 


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