[gmx-users] Change default "nice" option for mdrun (was: Can not find file: topol.tpr)

Dallas B. Warren Dallas.Warren at vcp.monash.edu.au
Fri Apr 28 02:55:50 CEST 2006

> I've done the test with lysozyme (cutoff) using only one of the CPUs
in one 
> of my machines, and got the  low performance of 3,256 ps /day (it
should be 
> 1494).  I'd like to know how it scalates, by running it using both
> CPUs inside this same machine, but when i do

Why is a calculation speed that is 2.2 times faster (3,256 ps/day versus
1,494 ps/day) "low performance"?

Catch ya,

Dr. Dallas Warren
Department of Pharmaceutical Biology and Pharmacology
Victorian College of Pharmacy, Monash University
381 Royal Parade, Parkville VIC 3010
dallas.warren at vcp.monash.edu.au
+61 3 9903 9524
When the only tool you own is a hammer, every problem begins to resemble
a nail.

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