[gmx-users] Which Lipid Bilayer for GPCR Simulations

Akshay Patny akshay17 at olemiss.edu
Wed Aug 2 18:47:25 CEST 2006

Dear All


I am trying to simulate a class A GPCR model in presence of a lipid bilayer.
For that, I am trying to prepare my initial system consisting of Protein +
Pre-hydrated Lipid bilayer + Counter-ions.


Since I would be using GROMACS 3.3.1, I am planning to use the pre-hydrated
lipid bilayer available through Prof. Peter Tieleman's website:


I am curious what kind of bilayer should I use out of DPPC, DMPC, POPC
available? Does some lipid bilayer provide certain advantages over others
for simulation of GPCRs?


I appreciate any suggestions regarding the same.





Akshay Patny

Graduate Research Assistant
Faser Hall 417, Department of Medicinal Chemistry

Research Institute of Pharmaceutical Sciences
University of Mississippi
University, MS 38677
E-mail: akshay17 at olemiss.edu
Tel: 662-915-1286 (office); Web: www.olemiss.edu 


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