[gmx-users] g_hbond account dieletric medium ?

David van der Spoel spoel at xray.bmc.uu.se
Thu Aug 3 16:12:41 CEST 2006

raja wrote:
> Hi XAvier,
> Thanks again, I meant the resistance caused due to dielectric of water
> separating two charged residues. I doubt whether it will allow the
> transfer of charge between them in order for hydrogen bond to be
> effected.
It's still unclear.

The hydrogen bonds you find are there because they are apparently 
stronger than hbonds with water. However they will still be broken 

David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se

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