[gmx-users] g_hbond account dieletric medium ?

[David van der Spoel]

raja wrote:
> Hi XAvier,
> Thanks again, I meant the resistance caused due to dielectric of water
> separating two charged residues. I doubt whether it will allow the
> transfer of charge between them in order for hydrogen bond to be
> effected.
It's still unclear.

The hydrogen bonds you find are there because they are apparently 
stronger than hbonds with water. However they will still be broken 
intermittently.

-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se
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