[gmx-users] trjconv problem

Marc Bruning bruning at mpghdb.desy.de
Fri Aug 4 16:44:49 CEST 2006


similar happened to me, when i used the -b and -e flags of trjconv. to me it 
seemed that if you do not hit exactly the time frame as written in the trr 
file, trjconv will not output anything. when i used the -dump flag it worked, 
because then frames near the specified time are dumped. hope that helps.


On Friday 04 August 2006 16:05, Bjoern Windshuegel wrote:
> Hi everybody,
> I am trying to extract some frames from my md simulation using trjconv. For
> some frames this works fine but for others of the same simulation I get the
> following error message (for frame after 5590 picoseconds):
> Skipping frame    500 time 5250.000
> Setting output precision to 0.001 (nm)
> WARNING no output, trajectory ended at 5590
> The trajectory has a length of 10 ns. I could successfully extract frames
> for 4310 and 8950 but not 3110, 5590 and 7020 picoseconds. Any idea what
> could be the problem?
> Best regards,
> Björn

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