[gmx-users] AFM pulling

[Susanna Hug]

Thanks, that's good to know!

Susanna

	 	From: "Susanna Hug" <s_hug at hotmail.com>
Reply-To: Discussion list for GROMACS users <gmx-users at gromacs.org>
To: gmx-users at gromacs.org
Subject: [gmx-users] AFM pulling
Date: Mon, 14 Aug 2006 13:23:28 +0200

Hi gmx-users!

I am trying to simulate the diffusion of mannitol through a lipid bilayer 
with AFM pulling.
Does someone have a idea, how I can calculate the diffusion coefficent from 
the potential of mean force?
I have some references, but for different methodes like umbrella sampling.

AFM pulling is identical to umbrella sampling.
(note that you should pull slow enough so the system is in equilibrium)

We should merge these two options into one option.

Berk.