[gmx-users] Hi ..

[Navratna Vajpai]

Dear All
I have been able to carry on with the MD run of my peptides. But when  
I converted the traj into the pdb file I realized that there are no  
HA atoms in the pdb. I checked the rtp file and found that even those  
atoms are not defined there. So can anyone tell me how to get the HA  
(after or before the MD run) as i need them explicitly . I was trying  
to look for the options available in the trjconv but could not find.
Thanks and regards
Nav

*******************************************
Navratna Vajpai
Ph. D student in Prof. Grzesiek's laboratory
Department of Structural Biology
Biozentrum, University of Basel
Klingelbergstrasse 70,
CH-4056
Basel, Switzerland.
Phone- +41 61 267 2080(O)
	       +41 78 744 0810(M)

navratna.vajpai at unibas.ch



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