[gmx-users] How to use deprotonated Cys

[raja]

Hi all,
I have protein with “cys” in active site, and I want to use deprotonated
“cys”. In manual for “pdb2gmx “ clearly says on option of choosing Cys
protonated state possibility but why that option not appearing while
running “pdb2gmx” , just like for “Arg”, “His”, “Asp” and “Glu”. I read
quite a lot of mails regarding this issue most of them are in “2004
archives”. Hope things are now changed and I can get some direct
solution for this from any of you. 
With thanks!
B.Nataraj
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  raja
  raja_28 at fastmail.us

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