[gmx-users] protein + a single lipid

[Mark Abraham]

sebastien santini wrote:
> Dear GMX users,
> I am trying to simulate a protein with a single lipid (a leukotrien)
> using ffG43a2.
> 
> I have some problem to generate the right topology and gro files.
> 
> Is there a smart way to use this FF and generate the files or have I to 
> do it
> by hand ??

pdb2gmx should work fine with the protein. One lipid molecule shouldn't 
be too hard to generate an .itp file for... find one you can use PRODRG 
for and modify, perhaps.

Mark