[gmx-users] do_dssp

singh singh at biophysik.chemie.uni-dortmund.de
Thu Dec 21 10:03:53 CET 2006



Dear Gromacs users,


I have simulated 12 peptide fragments in a cubic box and I want to use
do_dssp for secondary structure analysis but I am not sure whether Periodic
boundary conditions will be taken in account during assignment (particularly
for assigning betasheets).



Gurpreet Singh 


University of Dortmund
Department of Chemistry
Physical Chemistry I  -  Biophysical Chemistry
Otto-Hahn Str. 6
D-44227 Dortmund
Office:   C1-06 room 176
Phone:  +49 231 755 3916

Fax:     +49 231 755 3901




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