[gmx-users] Re: converting pdb to gmx successfully

[David Mathog]

Can anybody tell my why DT, DT5, DT3 and DTN use "O" instead of "O2"
in the Amber rtp file?  The other O in the base is labeled "O4" and
it just seems strange and somewhat illogical that O2 would not be
given an analogous name.

Thanks,

David Mathog
mathog at caltech.edu
Manager, Sequence Analysis Facility, Biology Division, Caltech