[gmx-users] rmsd-dist.xvg

[Itamar Kass]

Shalom all,

I am using g_cluster to analyze my MD results, where one of the  
output files is rmsd-dist.xvg.

I hope this is not a silly question, but I do wish to understand what  
this graph represents.  Is this the RMS distribution in the biggest  
cluster? Is this the RMS distribution among all clusters?

Also, what a.u. represents?

Finally, what can I learn from this graph on my results?

Best, Itamar.

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| Itamar Kass
| The Alexander Silberman
| Institute of Life Sciences
| Department of Biological Chemistry
| The Hebrew University, Givat-Ram
| Jerusalem, 91904, Israel
| Tel: +972-(0)2-6585194
| Fax: +972-(0)2-6584329
| Email: ikass at cc.huji.ac.il
| Homepage: http://www.ls.huji.ac.il/~membranelab/itamar/ 
itamar_homepage.html
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