[gmx-users] OPLSS-AA
Adriana Pietropaolo
adriana at ms.fci.unibo.it
Tue Feb 21 11:23:49 CET 2006
sorry Mark,
I hope to be more clearly
this is the error message:
Found 265 phi-psi combinations
Fatal error: Dihedral around 21,27 not found in topology
and in a last gromacs mail I found this:
Hi David,
> >
> >> I suspect it's a force field problem, that is you used OPLS, whereas
I'm
> >> afraid to admit that part of this code expects the topology to have
> >> gromos-like dihedrals. If this is the case you coud remake a topology
> >> using the ffgmx2 force field and use that for this analysis only.
> >
So, I would like to know if there's a g_rama error, or a more serious
problem with the reading of parameter file of OPLSS-AA, implicating the
goodness of my protein dynamics,
thanks and sorry again,
Adriana
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