[gmx-users] Problem with PME
David van der Spoel
spoel at xray.bmc.uu.se
Wed Feb 22 08:43:20 CET 2006
Srikrishna Sureshkumar wrote:
> Dear All
>
> I am new user to gromacs and i was trying to use the coloumbtype PME.
> When ever I use this type with the integrator Steep the simulation runs
> for ever. No output is generated it appears like the system is being put
> in the leep mode.
Are you running this on SGI?
I'm not sure what it could be, the mdp file is fine.
>
> I am ataching my MDP file. I would like to know if there is any
> correction I could do so that i can do my simulation properly. At the
> same time if I use coloubtype cut-off instaed of PME the simulation goes
> on properly and the only problem is that it does not converge in a
> single run.
>
> Thanks and Regards
>
> S. Srikrishna
>
>
>
>
>
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>
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--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://folding.bmc.uu.se
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