[gmx-users] Mac Installation

[Simon Holton]

Have tried the fink route but still have problems.  Sudo apt-get  
install fink doesn't work as there is no precompiled binary for gromacs  
available via fink.  Enabling the unstable branch I can then try to use  
fink to compile 3.2.1-5, but again this fails.  The last bit of the  
logfile looks like this;

cc -O6 -fomit-frame-pointer -finline-functions -Wall -Wno-unused  
-no-cpp-precomp -finline-limit=1000 -faltivec -funroll-all-loops  
-mcpu=7450 -mtune=970 -I/usr/include/libxml2 -o .libs/grompp topio.o  
toppush.o topcat.o topshake.o convparm.o tomorse.o sorting.o splitter.o  
dum_parm.o readir.o add_par.o topexcl.o toputil.o topdirs.o grompp.o   
-L/sw/lib -L../mdlib/.libs -lmd -L/usr/X11R6/lib -L/usr/lib  
-L../gmxlib/.libs -lgmx -lsrfftw -lsfftw -L/usr/local/lib -lXm  
-llanginfo -lXt -lSM -lICE -lXext -lXp -lX11 -lxml2 -lz -lpthread  
-liconv -lm
ld: can't locate file for: -llanginfo
make[3]: *** [grompp] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all] Error 2
make: *** [all-recursive] Error 1
### execution of make failed, exit code 2
Failed: compiling gromacs-3.2.1-5 failed

This is a fresh fink installation and so it seems unlikely there is any  
conflict with other installed programs.  Any suggestions?  Or could  
somebody privately  send me the complied binaries?

Cheers

	SImon




On Dec 21, 2005, at 7:43 PM, David van der Spoel wrote:

> Simon Holton wrote:
>
>> Hi,
>>
>>     I'm trying to install Gromacs on my mac (10.3.9).  Unfortunately,  
>>  although  the .dmg file from the ftp server installs all the right   
>> files, I think they will only work on 10.4.  Even running the simple   
>> test "luck" command results in a segmentation fault :-(
>>
>>     Is there a similar installer for those of use pre-10.4?  I don't   
>> really want  to get bogged down with compiling from scratch
>>
>
> You can also install it using fink, if you've installed that. If not,  
> go to fink.sf.net, grab the dmg and install it. Then type
> sudo apt-get install gromacs
>
>> Cheers
>>
>>     SImon
>>
>>
>> ======================
>> Dr. Simon Holton
>> EMBL Hamburg
>> Building 25A, DESY
>> Notkestrasse 85
>> 22603 Hamburg
>> Germany
>>
>> Tel: +49 (0)40 89902147 (office)
>> Tel: +49 (0)40 89902167 (lab)
>> Fax: +49 (0)40 89902149
>>
>> ======================
>>
>>
>>
>>
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>
>
>
> --  
> David.
> _______________________________________________________________________ 
> _
> David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
> Dept. of Cell and Molecular Biology, Uppsala University.
> Husargatan 3, Box 596,  	75124 Uppsala, Sweden
> phone:	46 18 471 4205		fax: 46 18 511 755
> spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
> +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ 
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