[gmx-users] vdwd option on genbox: Exactly what does it do?

[David Mobley]

Dear all,

genbox has a -vdwd option which specifies "default vdwaals distance". The
documentation isn't too clear about this; does it override what genbox
usually uses? Or is it only used for molecules which have no vdW parameters
or some such?

For anyone who cares: I'm trying to keep water somewhat further away from
the protein when solvating than is typical, and I'm trying to figure out
whether using -vdwd is a way to do this, or whether I'll have to make a
script to delete all of the waters within my desired cutoff distance from
the protein.

Thanks,
David
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20060109/91ca61fb/attachment.html>