[gmx-users] genbox/editconf

Junfang.Zhang at csiro.au Junfang.Zhang at csiro.au
Thu Jan 12 01:07:42 CET 2006

Dear Yang Ye and Gromacs Users,

Can you please let me know how to insert water molecules (water.gro)
between two fixed layers (wall.gro). The normal of the layers is in z

When I used

genbox -cp wall.gro -cs water.gro -box 2.112 1.828 1.8 -o out.gro

I found some water molecules are not between the two layers.

As -box specify the box vector lengths, 

how could I put water molecules in the range of z coordinates between
0.5 and 1.8?

Thank you in advance,


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