[gmx-users] genbox/editconf

Junfang.Zhang at csiro.au Junfang.Zhang at csiro.au
Thu Jan 12 01:39:41 CET 2006

Hi Mark,

Thank you for your reply. 

In my simulation geometry, the two fixed layers are from z: 0.0-0.5 and

I am intending to insert water molecules between z: 0.5-1.8

What command is used to concatenate the resulting files?

Regards and thanks,


-----Original Message-----
From: gmx-users-bounces at gromacs.org
[mailto:gmx-users-bounces at gromacs.org] On Behalf Of Mark Abraham
Sent: Thursday, 12 January 2006 11:15 AM
To: Discussion list for GROMACS users
Subject: Re: [gmx-users] genbox/editconf

> how could I put water molecules in the range of z coordinates between
> 0.5 and 1.8?

One tactic would be to fill such a box independent of wall.gro and 
concatenate the resulting pdb files... you'd have to fix the atom and 
residue numbers somehow though.

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