[gmx-users] Topolofy files

MGiò magiofer at gmail.com
Thu Jan 12 10:42:23 CET 2006

the easiest way to build a gromacs topology file for any molecule is to
submit your regular pdb file to the on-line tool prodrg


unluckily sometimes the topology could contain some errors of atom type
attribution, so take it carefully!

hope it helps,

On 1/12/06, Roman Holomb <romhol at fy.chalmers.se> wrote:
> Dear Gromacs users,
> I'm trying to build the topology files for Butyl-3(Ethyl-3 and
> Hexyl-3)-methylimidazolium tetrafluoroborates.
> Can anyone know how to do it manually when pdb files of these systems
> have not all information?
> Maybe the proper pdb files excists?
> Thanks
> /Roman
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