[gmx-users] Error in installation

Dhananjay dhananjay.c.joshi at gmail.com
Thu Jan 19 09:57:26 CET 2006


Well, I have Gromacs-3.3  with single precision.

lam-7.0.6 is alrady installed and fftw-3.0.1 with double precision is also
installed.
befire excuting following steps I have gone through following steps:

export CPPFLAGS=-I/usr/local/includ
 export LDFLAGS=-L/usr/local/lib

then for Gromacs-3.3 with double precission I took following steps:

1.  make distclean
2. ./configure --disable-float  --enable-shared
3. make

make has generated following error:

collect2: ld returned 1 exit status
make[3]: *** [grompp] Error 1
make[3]: Leaving directory
`/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3/src/kernel'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory
`/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory
`/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3/src'
make: *** [all-recursive] Error 1


What is wrong here ?


On 1/19/06, David van der Spoel <spoel at xray.bmc.uu.se> wrote:
>
> Dhananjay wrote:
> > Hello all,
> >
> > I got error in installation of gromacs in double precision. The error is
> > as follows:
> >
> > collect2: ld returned 1 exit status
> > make[3]: *** [grompp] Error 1
> > make[3]: Leaving directory
> > `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3
> /src/kernel'
> > make[2]: *** [all-recursive] Error 1
> > make[2]: Leaving directory
> > `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3/src'
> > make[1]: *** [all] Error 2
> > make[1]: Leaving directory
> > `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3/src'
> > make: *** [all-recursive] Error 1
> >
> > I have followed all the steps given on the web and still grtting this
> error.
> >
> > Please tell me what is wrong here ?
> you have not send the interesting bit of information, right before this,
> i.e. the real error.
> what platform is this?
>
> >
> > -- Dhananjay
> >
> >
> > ------------------------------------------------------------------------
> >
> > _______________________________________________
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>
>
> --
> David.
> ________________________________________________________________________
> David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
> Dept. of Cell and Molecular Biology, Uppsala University.
> Husargatan 3, Box 596,          75124 Uppsala, Sweden
> phone:  46 18 471 4205          fax: 46 18 511 755
> spoel at xray.bmc.uu.se    spoel at gromacs.org   http://folding.bmc.uu.se
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
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