[gmx-users] Error in installation

Dhananjay dhananjay.c.joshi at gmail.com
Thu Jan 19 12:46:50 CET 2006


*** Warning: This system can not link to static lib archive
/usr/local/lib/libfftw3.la.
*** I have the capability to make that library automatically link in when
*** you link to this library.  But I can only do this if you have a
*** shared version of the library, which you do not appear to have.


I hope this is the real error.

Now please tell me what is wrong ?

On 1/19/06, David van der Spoel <spoel at xray.bmc.uu.se> wrote:
>
> Dhananjay wrote:
> > Well, I have Gromacs-3.3  with single precision.
> >
> > lam-7.0.6 is alrady installed and fftw-3.0.1 with double precision is
> > also installed.
> > befire excuting following steps I have gone through following steps:
> >
> > export CPPFLAGS=-I/usr/local/includ
> > export LDFLAGS=-L/usr/local/lib
> >
> > then for Gromacs-3.3 with double precission I took following steps:
> >
> > 1.  make distclean
> > 2. ./configure --disable-float  --enable-shared
> > 3. make
> >
> > make has generated following error:
> >
> > collect2: ld returned 1 exit status
> > make[3]: *** [grompp] Error 1
> > make[3]: Leaving directory
> > `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3
> /src/kernel'
> > make[2]: *** [all-recursive] Error 1
> > make[2]: Leaving directory
> > `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3/src'
> > make[1]: *** [all] Error 2
> > make[1]: Leaving directory
> > `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3/src'
> > make: *** [all-recursive] Error 1
> >
> >
> > What is wrong here ?
> You still don't print the real error.
>
> >
> >
> > On 1/19/06, *David van der Spoel* <spoel at xray.bmc.uu.se
> > <mailto:spoel at xray.bmc.uu.se>> wrote:
> >
> >     Dhananjay wrote:
> >      > Hello all,
> >      >
> >      > I got error in installation of gromacs in double precision. The
> >     error is
> >      > as follows:
> >      >
> >      > collect2: ld returned 1 exit status
> >      > make[3]: *** [grompp] Error 1
> >      > make[3]: Leaving directory
> >      >
> >     `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3
> /src/kernel'
> >      > make[2]: *** [all-recursive] Error 1
> >      > make[2]: Leaving directory
> >      > `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs- 3.3
> /src'
> >      > make[1]: *** [all] Error 2
> >      > make[1]: Leaving directory
> >      > `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3
> /src'
> >      > make: *** [all-recursive] Error 1
> >      >
> >      > I have followed all the steps given on the web and still grtting
> >     this error.
> >      >
> >      > Please tell me what is wrong here ?
> >     you have not send the interesting bit of information, right before
> this,
> >     i.e. the real error.
> >     what platform is this?
> >
> >      >
> >      > -- Dhananjay
> >      >
> >      >
> >      >
> >
> ------------------------------------------------------------------------
> >      >
> >      > _______________________________________________
> >      > gmx-users mailing list
> >      > gmx-users at gromacs.org <mailto:gmx-users at gromacs.org>
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> >     <mailto:gmx-users-request at gromacs.org>.
> >
> >
> >     --
> >     David.
> >
> ________________________________________________________________________
> >     David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
> >     Dept. of Cell and Molecular Biology, Uppsala University.
> >     Husargatan 3, Box 596,          75124 Uppsala, Sweden
> >     phone:  46 18 471 4205          fax: 46 18 511 755
> >     spoel at xray.bmc.uu.se
> >     <mailto:spoel at xray.bmc.uu.se>    spoel at gromacs.org
> >     <mailto:spoel at gromacs.org>   http://folding.bmc.uu.se
> >
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
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> >
> >
> > ------------------------------------------------------------------------
> >
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>
> --
> David.
> ________________________________________________________________________
> David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
> Dept. of Cell and Molecular Biology, Uppsala University.
> Husargatan 3, Box 596,          75124 Uppsala, Sweden
> phone:  46 18 471 4205          fax: 46 18 511 755
> spoel at xray.bmc.uu.se    spoel at gromacs.org   http://folding.bmc.uu.se
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
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