[gmx-users] how to assign for the membrane protein!]

David van der Spoel spoel at xray.bmc.uu.se
Fri Jan 20 08:41:18 CET 2006

May i ask you about the mdp file for running protein membrane, If i 
applied isotropic for pcoulpletype of my system (protein/lipid bilayer), 
how do you think about the results - is it effected far from when 
semiisotropic is applied? By the way, if i use semiisotropic for 
pcoupltype, what the values of tau_p and compressibility should be 
applied in this system.

Best regard,

David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se

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