[gmx-users] select a fragment for g_rms

[Adriana Pietropaolo]

Hi all,
I've a question about the analysis of a protein fragment with g_rms, I 
mean of a part of the protein with the same part reference structure.
With g_rms is it possible to give an index file with only the selected 
atom and not concerning all the protein?
I mean, if I use the whole trr and a selected index file, is it possible 
to compare only the selected fragment?
Thanks in advance,
Adriana

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Adriana Pietropaolo,
PhD student,
dipartimento di Chimica Fisica ed Inorganica,
Facolta' di Chimica Industriale
Universita' di Bologna
WEB:www2.fci.unibo.it/~adriana
Tel 051/6446992
FAX 051/2093690 
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