[gmx-users] select a fragment for g_rms

Adriana Pietropaolo adriana at ms.fci.unibo.it
Mon Jan 23 19:07:43 CET 2006

Hi all,
I've a question about the analysis of a protein fragment with g_rms, I 
mean of a part of the protein with the same part reference structure.
With g_rms is it possible to give an index file with only the selected 
atom and not concerning all the protein?
I mean, if I use the whole trr and a selected index file, is it possible 
to compare only the selected fragment?
Thanks in advance,

Adriana Pietropaolo,
PhD student,
dipartimento di Chimica Fisica ed Inorganica,
Facolta' di Chimica Industriale
Universita' di Bologna
Tel 051/6446992
FAX 051/2093690 

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