[gmx-users] Co-ordinates of atoms.

[Mark Abraham]

> Dear users, I want to use another viewing software for my output file. Can
> I
> get my co-ordinates in a txt file from gromacs? I think the manual only
> gives the option of writing the co-ordiantes to a traj.trr file which
> cannot
> be opened by any text editors. Can I see these values of my co-ordinates
> at
> various time intervals using any other editor, from which i can covert it
> to
> text?

Use trjconv -f traj.trr -o othertraj.xxx

See manpage description of -o for the various options for xxx.

Mark