[gmx-users] Scripting Analysis tools in tcsh

[Olli Lehtonen]

On Fri, 30 Jun 2006, Arneh Babakhani wrote:

> Hello GMX users,
>
> (this may be more of a tcsh question, but here goes anyway).
>
> I'm trying to write a script to go through some trajectories and
> calculate hbonding.  It looks like this:
>
> #!/bin/tcsh
> foreach number (1 2 3 4 5 6 7 8 9 10 11)
>         g_hbond -f ../../FullMD/FullMD$number.trr -s
> ../../FullMD/FullMD$number.tpr -num hbnum-all-$number <<+
>  1
>  12
>  +
> end

You are probably having an extra space in front of the latter + sign. Now
+ and end are considered as input for g_hbond.

Olli

PS. For general shell script questions a newsgroup like comp.unix.shell is
a good place to keep in mind.