[gmx-users] RMSD for domain

Dhananjay dhananjay.c.joshi at gmail.com
Mon Jul 17 17:36:29 CEST 2006

Hello all,

My protein consist of two domains.

I got RMSD plot for complete system.

According to the manual one can calculate RMSD for different time period by
initiating initial and final time.

Will it be possible to calculate RMSD for two seperate domains(by
restricting residues) of the same system over same time period?

Thanking you in advance.

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