[gmx-users] RMSD for domain

leafyoung81-group at yahoo.com leafyoung81-group at yahoo.com
Mon Jul 17 18:23:08 CEST 2006

with an index file

----- Original Message ----
From: Dhananjay <dhananjay.c.joshi at gmail.com>
To: Discussion list for GROMACS users <gmx-users at gromacs.org>
Sent: Monday, July 17, 2006 11:36:29 PM
Subject: [gmx-users] RMSD for domain

Hello all,

My protein consist of two domains. 

I got RMSD plot for complete system.

According to the manual one can calculate RMSD for different time period by initiating initial and final time.

 Will it be possible to calculate RMSD for two seperate domains(by restricting residues) of the same system over same time period?

Thanking you in advance.

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