[gmx-users] gromacs parallel doesn't work

David van der Spoel spoel at xray.bmc.uu.se
Sat Jun 3 19:26:51 CEST 2006


Yang Ye wrote:
> First, make sure that you used mdrun -np 2.
> Second, check your energy profile. Is your laptop running in top speed? 
> or does it have sleep time?

mpirun -c 2 mdrun

> 
> Yang Ye
> 
> Beniamino Sciacca wrote:
>> I don't understand what you talking about...
>> I didn't write any hostfile.... I'm not in a cluster. I only use my 
>> notebook with the two cores.
>> In fact I type "lamboot" without -v.......
>>
>> Beniamino
>>
>> Mark Abraham ha scritto:
>>> Did your default LAM hostfile configuration (or whatever it is) 
>>> change from 2 processors to one?
>>>
>>> Mark
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> 


-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se
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