[gmx-users] Free volume: Pass and Gromacs

[Alessandro Mattozzi]

Hi all
I wonder if anybody has been using Pass to measure free volume: I got these errors:
 
-Error:  Found an odd element (B) on atom #13454.  Hydrogen radius assigned.
Suggestion: Do I have to remove all the dummies?

-Segmentation fault
Suggestion: I use trjconv to get a pdb; is it possible that I am doing some mistake in the conversion?

Thanx

Alessandro Mattozzi
M.Phil., Ph.D. student
Dept. of Fibre and Polymer Technology
Royal Institute of Technology
Stockholm, Sweden

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