[gmx-users] regarding visualizing the output

[Tsjerk Wassenaar]

Hi Lali,

In VMD you can view .xtc files directly. Check the gromacs archive or the
VMD manual. Besides, you can use trjconv with -b and -e to extract a certain
time frame. Please check the Gromacs manual or try trjconv -h (also to find
out what else is possible).

Best regards,

Tsjerk

On 6/13/06, lalitha selvam <hayagrivar at hotmail.com> wrote:
>
> hello sir,
>
> 1.i ran simulation for 2 ns.....i want to view the structure from 1500 to
> 2000 frames at every 25 ps.how to get it in pdb strucutres of the above
> wanted frames.
>
> 2.with the use of trjconv i had one pdb file converted from one frame. i'm
> viewing that structure with VMD, but when i'm trying to load in NOC
> software
> i'm not able to view.cant we view that pdb structures converted from
> gromacs
> in other visualization software.
>
> please anyone explain me.
>
> regards
> lali.s
>
> _________________________________________________________________
> Cox & Kings presents 'Win a trip for 2 to Austria' Contest. Click here
>
> http://www.coxandkings.com/cms/products/specialpromotions/?link=view&CM_ID=78
>
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
>



-- 

Tsjerk A. Wassenaar, M.Sc.
Groningen Biomolecular Sciences and Biotechnology Institute (GBB)
Dept. of Biophysical Chemistry
University of Groningen
Nijenborgh 4
9747AG Groningen, The Netherlands
+31 50 363 4336
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20060613/81a37295/attachment.html>