[gmx-users] Cannot compile Gromacs on Solaris

MS xmagg at tlen.pl
Thu Jun 22 15:35:37 CEST 2006


I have a problem:

gromacs-3.3.1$ ./configure --enable-shared --disable-float

and then make
I got the following error:
gromacs-3.3.1$ echo $LD_LIBRARY_PATH

Do you have any idea what is going on and why?
Thanks in advance

/bin/bash ../../libtool --tag=CC --mode=link /usr/local/gnu/gcc-2.95.2/gcc     -
L/home/magg/usr/fftw/lib  -L/usr/ucblib -o libmd_d.la -rpath /home/magg/usr/grom
acs/lib -version-info 4:0:0 calcmu.lo calcvir.lo constr.lo  coupling.lo ebin.lo
edsam.lo ewald.lo force.lo ghat.lo init.lo  mdatom.lo mdebin.lo minimize.lo ns.l
o nsb.lo nsgrid.lo pme.lo  pppm.lo fftgrid.lo pull.lo pullinit.lo pullio.lo pull
util.lo  rf_util.lo shakef.lo sim_util.lo splittop.lo tables.lo  tgroup.lo updat
e.lo vcm.lo vsite.lo wnblist.lo csettle.lo  clincs.lo qmmm.lo gmx_fft.lo gmx_par
allel_3dfft.lo qm_gaussian.lo gmx_fft_fftw3.lo -L/usr/ccs/lib -L/usr/lib -L/home
/magg/usr/fftw/lib -L/usr/local/lib/gcc-lib/sparc-sun-solaris2.7/2.95.2 -L/usr/l
ocal/sparc-sun-solaris2.7/lib -L/usr/ccs/bin -L/usr/local/lib -lg2c -lm  -lnsl -
lfftw3 -lm  -lXm -lXt  -lSM -lICE -lXext -lXp -lX11 -lsocket
/usr/local/gnu/gcc-2.95.2/gcc -shared -Wl,-h -Wl,libmd_d.so.4 -o .libs/libmd_d.s
o.4.0.0  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/eb
in.o .libs/edsam.o .libs/ewald.o .libs/force.o .libs/ghat.o .libs/init.o .libs/m
datom.o .libs/mdebin.o .libs/minimize.o .libs/ns.o .libs/nsb.o .libs/nsgrid.o .l
ibs/pme.o .libs/pppm.o .libs/fftgrid.o .libs/pull.o .libs/pullinit.o .libs/pulli
o.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/split
top.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .li
bs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/g
mx_parallel_3dfft.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -L/home/magg/usr/
fftw/lib -L/usr/ucblib -L/usr/ccs/lib -L/usr/lib -L/usr/local/lib/gcc-lib/sparc-
sun-solaris2.7/2.95.2 -L/usr/local/sparc-sun-solaris2.7/lib -L/usr/ccs/bin -L/us
r/local/lib -lg2c -lnsl /home/magg/usr/fftw/lib/libfftw3.a -lm -lXm -lXt -lSM -l
ICE -lXext -lXp -lX11 -lsocket -lc
Text relocation remains                         referenced
    against symbol                  offset      in file
<unknown>                           0x464       /home/magg/usr/fftw/lib/libfftw3
<unknown>                           0x470       /home/magg/usr/fftw/lib/libfftw3
<unknown>                           0x78        /home/magg/usr/fftw/lib/libfftw3

  else \
    local_target="$target"; \
  fi; \
  (cd $subdir && make  $local_target) \
  || eval $failcom; \
done; \
if test "$dot_seen" = "no"; then \
  make  "$target-am" || exit 1; \
fi; test -z "$fail"
make: Fatal error: Command failed for target `all-recursive'

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