[gmx-users] Supradiffusivity
이 선주
sunnytov at hotmail.com
Wed Jun 28 19:52:20 CEST 2006
Hello Users
I have seen that it is needed to define three separate groups for
center-of-mass motion removal: water and a separate group for each lipid
layer in order to remove supradiffusivity of the two leaflets.
Can anyone tell me whether my settings are correct?
-----------------------------------------------------------------------------
comm-grps = UpLeaflet LowLeaflet SOL
nstxout = 1000
nstvout = 1000
nstlog = 1000
nstenergy = 1000
nstxtcout = 1000
nstlist = 10
ns_type = grid
rlist = 1.0
coulombtype = PME
rcoulomb = 1.0
rvdw = 1.0
Tcoupl = Nose-Hoover
tc_grps = UpLeafelt LowLeaflet SOL
tau_t = 0.5 0.5 0.5
ref_t = 303 303 303
----------------------------------------------------------------------------
Is it correct or enough to remove supradiffusivity and calculate diffusion
coefficient?
Thanks in advance
Sunjoo
More information about the gromacs.org_gmx-users
mailing list