[gmx-users] Segmentation fault
ajogale at emory.edu
Mon Mar 6 22:11:15 CET 2006
Well, the log file says that the protocol is dying even before it
starts the MD...so it stops right after it says
'Initializing LINear Constraint Solver'
after which it displays the segmentation fault.
On Mar 6, 2006, at 1:30 PM, Mark Abraham wrote:
> Ashutosh Jogalekar wrote:
>> Hello everyone
>> I am doing MD on a peptide, and everything including the EM seems
>> to go well. When I start to do the position restrained MD (or
>> even directly the MD without doing the PR MD), I get a
>> "Segmentation fault". I know that this is a generic error and
>> cannot point directly to a specific source for the problem; on
>> the other hand, there must be some specific source. So I was
>> wondering whether anyone else has fixed this problem in a
>> particular manner. I checked my input and everything seems to be
>> ok at first sight.
> gromacs is normally quite graceful about dying and telling you
> where it is dying, and sometimes why. You will need to provide the
> last section of the .log file.
> gmx-users mailing list gmx-users at gromacs.org
> Please don't post (un)subscribe requests to the list. Use the www
> interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
More information about the gromacs.org_gmx-users